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Publications

Long form reports from NW-PaGe. These include peer-reviewed publications and preprints, whitepapers sharing our technical approaches and strategy surrounding building pathogen genomics capacity, and findings from evaluations performed by the Center.

Title
Associations Between Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Variants and Risk of Coronavirus Disease 2019 (COVID-19) Hospitalization Among Confirmed Cases in Washington State: A Retrospective Cohort Study
Changing genomic epidemiology of COVID-19 in long-term care facilities during the 2020–2022 pandemic, Washington State
Sentinel Surveillance System Implementation and Evaluation for SARS-CoV-2 Genomic Data, Washington, USA, 2020–2021
How To Guide: NW-PaGe policies and practices for using public Git repositories
Pathogen Genomics Profile: Corynebacterium diphtheriae
Pathogen Genomics Profile: Candida auris
Fine-scale patterns of SARS-CoV-2 spread from identical pathogen sequences

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